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  1. The analysis of nuclear magnetic resonance (NMR) spectra for the comprehensive and unambiguous identification and characterization of peaks is a difficult, but critically important step in all NMR analyses of complex biological molecular systems. Here, we introduce DEEP Picker, a deep neural network (DNN)-based approach for peak picking and spectral deconvolution which semi-automates the analysis of two-dimensional NMR spectra. DEEP Picker includes 8 hidden convolutional layers and was trained on a large number of synthetic spectra of known composition with variable degrees of crowdedness. We show that our method is able to correctly identify overlapping peaks, including ones that are challenging for expert spectroscopists and existing computational methods alike. We demonstrate the utility of DEEP Picker on NMR spectra of folded and intrinsically disordered proteins as well as a complex metabolomics mixture, and show how it provides access to valuable NMR information. DEEP Picker should facilitate the semi-automation and standardization of protocols for better consistency and sharing of results within the scientific community. 
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  2. null (Ed.)
    We present a chemo-dynamical study of the Orphan stellar stream using a catalog of RR Lyrae pulsating variable stars for which photometric, astrometric, and spectroscopic data are available. Employing low-resolution spectra from the Sloan Digital Sky Survey (SDSS), we determined line-of-sight velocities for individual exposures and derived the systemic velocities of the RR Lyrae stars. In combination with the stars’ spectroscopic metallicities and Gaia EDR3 astrometry, we investigated the northern part of the Orphan stream. In our probabilistic approach, we found 20 single mode RR Lyrae variables likely associated with the Orphan stream based on their positions, proper motions, and distances. The acquired sample permitted us to expand our search to nonvariable stars in the SDSS dataset, utilizing line-of-sight velocities determined by the SDSS. We found 54 additional nonvariable stars linked to the Orphan stream. The metallicity distribution for the identified red giant branch stars and blue horizontal branch stars is, on average, −2.13 ± 0.05 dex and −1.87 ± 0.14 dex, with dispersions of 0.23 and 0.43 dex, respectively. The metallicity distribution of the RR Lyrae variables peaks at −1.80 ± 0.06 dex and a dispersion of 0.25 dex. Using the collected stellar sample, we investigated a possible link between the ultra-faint dwarf galaxy Grus II and the Orphan stream. Based on their kinematics, we found that both the stream RR Lyrae and Grus II are on a prograde orbit with similar orbital properties, although the large uncertainties on the dynamical properties render an unambiguous claim of connection difficult. At the same time, the chemical analysis strongly weakens the connection between both. We argue that Grus II in combination with the Orphan stream would have to exhibit a strong inverse metallicity gradient, which to date has not been detected in any Local Group system. 
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  3. null (Ed.)
  4. Abstract

    Observatory‐scale data collection efforts allow unprecedented opportunities for integrative, multidisciplinary investigations in large, complex watersheds, which can affect management decisions and policy. Through the National Science Foundation‐funded REACH (REsilience under Accelerated CHange) project, in collaboration with the Intensively Managed Landscapes‐Critical Zone Observatory, we have collected a series of multidisciplinary data sets throughout the Minnesota River Basin in south‐central Minnesota, USA, a 43,400‐km2tributary to the Upper Mississippi River. Postglacial incision within the Minnesota River valley created an erosional landscape highly responsive to hydrologic change, allowing for transdisciplinary research into the complex cascade of environmental changes that occur due to hydrology and land use alterations from intensive agricultural management and climate change. Data sets collected include water chemistry and biogeochemical data, geochemical fingerprinting of major sediment sources, high‐resolution monitoring of river bluff erosion, and repeat channel cross‐sectional and bathymetry data following major floods. The data collection efforts led to development of a series of integrative reduced complexity models that provide deeper insight into how water, sediment, and nutrients route and transform through a large channel network and respond to change. These models represent the culmination of efforts to integrate interdisciplinary data sets and science to gain new insights into watershed‐scale processes in order to advance management and decision making. The purpose of this paper is to present a synthesis of the data sets and models, disseminate them to the community for further research, and identify mechanisms used to expand the temporal and spatial extent of short‐term observatory‐scale data collection efforts.

     
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